PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3289_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARF
Protein Properties Length: 830aa    MW: 92161.5 Da    PI: 6.6279
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3289_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.12.3e-11147234199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 f+k+lt sd++++g +++ +++a+e+     +++ l l++ + ++  +++  ++ s +++ ++GW+ Fv++++L +gD ++F   + +++el+v+v+r+
  RrC3289_p2 147 FCKTLTASDTSTHGGFSVLRRHADEI-----CHFNLLLRS-WLQKICMQM--SGVS-GIFSESGWSVFVSSKRLVAGDAFIFL--RGENGELRVGVRRA 234
                 99*********************877.....444566554.555666666..4444.488999********************..449999*****996 PP

2Auxin_resp50.21.1e-172703343083
  Auxin_resp  30 kvekalkvkvsvGmRfkmafetedsserr...........lsGtvvgvsdldpvrWpnSkWrsLk 83 
                  +++++k+++s+GmRfkm+fe+e+++e+r           ++Gt+vg++d+dp +W +SkWrsLk
  RrC3289_p2 270 TYMESVKKNYSIGMRFKMRFEGEEAPEQRrssltvltcirFTGTIVGIEDSDPRSWAKSKWRSLK 334
                 699**********************99753333333322259*********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-18143248IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.62E-17143262IPR015300DNA-binding pseudobarrel domain
CDDcd100172.45E-9145233No hitNo description
SMARTSM010191.8E-8147235IPR003340B3 DNA binding domain
PfamPF023622.6E-9147234IPR003340B3 DNA binding domain
PROSITE profilePS508638.966180235IPR003340B3 DNA binding domain
PfamPF065071.1E-14270334IPR010525Auxin response factor
PfamPF023094.2E-5615728IPR033389AUX/IAA domain
PROSITE profilePS5174521.017692773IPR000270PB1 domain
SuperFamilySSF542771.18E-9694765No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 830 aa     Download sequence    Send to blast
MTSSVKGNHH HGGENDAVSS VVVVAGEGQN SHLNRVEAAI YRELWHACAG PLVTVPRRDD  60
RVFYFPQGHI EQVEASTNQA AEHQMPLYDL PSKLLCRVIN VDLKAEVDTD EVYAQITLLP  120
EPNQDENAIE KEAPPLPPPP RFQVHSFCKT LTASDTSTHG GFSVLRRHAD EICHFNLLLR  180
SWLQKICMQM SGVSGIFSES GWSVFVSSKR LVAGDAFIFL RGENGELRVG VRRAMRQQGN  240
VPSSVISSHS MHLGVLATAW HAISTGTMFT YMESVKKNYS IGMRFKMRFE GEEAPEQRRS  300
SLTVLTCIRF TGTIVGIEDS DPRSWAKSKW RSLKVRWDET STIPRPERVS PWKIEPALAP  360
PALSPVPMAR PKRPRSNMAP SSPDSSMHIK EGSSKANLYP LPASGLSRVL QGQEYPTLRT  420
KHTESAECDA PETSVVWQSS ADDDKVDVAS RRYDNWMSSG RHEASYTDLL SGFGANGDPS  480
HGHQIPFYDN HSSSPSVTAK KILSEQDAKF DYLANQWQMM HSGLSLKLHE SPKIPAASDA  540
SFTQGQGNAR YGEYPVLHAL TTETAGSNWP IRPRALNYFE EAVHAQTQAQ AQAQARENVT  600
KQPAVVQEET AKPGDGNCRL FGIPLVNNVN KTDSTMSQRN KLNETSGFTQ LASPRVQDLS  660
DHSKGSKSTN DHREQSKPSQ AKDGHCKTNS SRSCTKVHKQ GIVLGRSVDL SKFQNYEELI  720
AELDMLFEFN GELMARKKDW LVVYTDDEDD MMLVGDDPWQ EFCCMIFIYT KEVVMKMNSG  780
TLSCRSEEEV AVVGEGSDAK DAKSASNPSL SSELLNQKNQ LQAEVCMLLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1253935618354Auxin response factor 1
4ldw_A1e-1253935618354Auxin response factor 1
4ldw_B1e-1253935618354Auxin response factor 1
4ldx_A1e-1253935618354Auxin response factor 1
4ldx_B1e-1253935618354Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794590.0JN979459.1 Brassica rapa subsp. pekinensis auxin response factor 2-1 (ARF2-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130187.10.0PREDICTED: auxin response factor 2-like
RefseqXP_013678281.10.0PREDICTED: auxin response factor 2-like isoform X2
SwissprotQ94JM30.0ARFB_ARATH; Auxin response factor 2
TrEMBLA0A078JPD80.0A0A078JPD8_BRANA; Auxin response factor
STRINGAT5G62000.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53482647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2